Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPTVVIDLVDQLKGNYSIKLI-------------LEVLNIPKSTYYRWKNKTYKNDTVTQKVIELCEANHY----TYGYRKITALINQCYTSPINHKRVQRMMQKHHLNCRVRPKKTTRIGKPYYKTDNLLQR
4QD2 Chain:B ((12-91))
--------------GNYNIKSIFSGSLYLNPVSKSLTFSNESSANNQKW-NVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSLSNRCYWFPI---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7769 for 298 contacts (-26.1/contact) +
2D Compatibility (PS) -6652 + (NN) 1249 + (LL) 4176
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -13296.0 ( -44.62 by residue)
QMean score : 0.124
(partial model without unconserved sides chains):
PDB file :
Tito_4QD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QD2-query.scw
PDB file :
Tito_Scwrl_4QD2.pdb
: