Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLGEKGTVDAFVNGASSLVGVSLIIG--------LARGINLVLNKGMISDTILHFSSSIVQHMSG-PLFIIVLLFIFFCLG---FIVPSSS----GLAVLSMPI-----FAPLADTVGIPRFVIVT-TYQFGQYAMLFLAPTGLVMA----TLQMLNVRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS---------------------------------------
1GEQ Chain:A ((1-248))
------MFK------DGSLIPYLTAGDPDKQSTLN-FLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLY---EIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI
General information:
TITO was launched using:
RESULT:
Template:
1GEQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -238673 for 1281 contacts (-186.3/contact) +
2D Compatibility (PS) -19049 + (NN) -3777 + (LL) 1588
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -265861.0 ( -207.54 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_1GEQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEQ-query.scw
PDB file :
Tito_Scwrl_1GEQ.pdb
: