Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------MEDLKESLKSLG-WWDLFFAIPMFLLFAYLPNYNFITIFLNIVIIIFFSIGLILTTHIIIDKIKSNTK--------------------------------------------------------
1DVO Chain:A ((33-184))
PPKWKVKKQKLAEKAAREAELTAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLA---------CGIRDVLLEDVAQRNIPLSHKKLRRAMKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEVYAAERLDKIRRQNRIKAELQAVLD
General information:
TITO was launched using:
RESULT:
Template:
1DVO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40965 for 349 contacts (-117.4/contact) +
2D Compatibility (PS) -5598 + (NN) 3684 + (LL) 448
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -44181.0 ( -126.59 by residue)
QMean score : 0.233
(partial model without unconserved sides chains):
PDB file :
Tito_1DVO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVO-query.scw
PDB file :
Tito_Scwrl_1DVO.pdb
: