Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MERVLITGGAGFIGSH-LVDDLQQDYDVYVLDNYRTGKREN---IKSLADDH--VFELDIREYDAVEQIMKTYQFDYVIHLAALVSVAESVEKPILSQEINVVATLRLLEIIKKYNSHIKRFIFASSAAVYGDLPDLPKSDQ-SLILPLSPYAIDKYYGERTTLNYCSLY-NIPTAVVKFFNVFG--PRQDPKSQYSGVISKMFD-----SFEHNKPFTFFG------DGLQTRDFVYVYDVVQSVRLIME---HKDAIGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHEFKEARKGDIKHSYADISNL-KALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS |
1UDC Chain:A ((2-329)) | --RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN--VKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQ--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172725 for 2574 contacts (-67.1/contact) +
2D Compatibility (PS) -31976 + (NN) -7026 + (LL) 1636
1D Compatibility (HY) -18000 + (ID) 5250
Total energy: -233341.0 ( -90.65 by residue)
QMean score : 0.462
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