Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIIYCITKADNGGAQTHLIQLANHFC-VHHDVYVIVGNHGPMIEQLDARVNVIILEHLVGPIDFKQDILAVKVLAQLFSKIKP-------DVIHLHSSKAGTVGRIAKFISKSKDTRVVFTAHGWAFTEGVKPAKKFLYLVIEKLMSCITDSII---CVSDFDKQLALKYRFNRLKLTTIHNGIADVPAVKQTLKSQSHNNIGEVVGMLPNKQDLQINAPTKHQFVMIARFAYPKLPQNLIAAIEILKLHNSNHAHFTFIGDGPTLNDCQQQVVQAG-LENDVTFLGNVINASHLLSQYDTFILISKH---EGLPISIIEAMATGLPVIASHVGGISELVADNGICMM------NNQPETIAKVLEKYLIDSDYIKMSNQSRKRYLECFTEEKMIKEVEDVYNGKSTQ |
| 4N9W Chain:A ((19-367)) | ------------GGVQSHVLQLAEVLRDAGHEVSVLA-PASPHVKLPD----YVVSGGKAVPIPYNGSVARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLAL---QAAEGPIVATFH-------TSTTKSLTLSVFQGILRPYHEKIIGRIAVS----------------AVEIPNGV-DVASFADAPLLDGYPREGRTVLFLG-----RYDEPRKGMAVLLA--ALPKLVARF-PDVEIL-----------IVGRG----DEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETV------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4N9W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157483 for 2436 contacts (-64.6/contact) +
2D Compatibility (PS) -33078 + (NN) -5203 + (LL) 4532
1D Compatibility (HY) -17600 + (ID) 4100
Total energy: -212932.0 ( -87.41 by residue)
QMean score : 0.411
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