Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEKKILILCQYFYPEYVSSATLPTQLAEDLIANHINVDVMCGWPYEYSNHKQVSKTEMHRGIRIRRLKYSRFNNKSKVGRIINFFSLFSKFVINIPKMLKYDQILVYSNPPILPLIPDVLHR--LLKKKYSFVVYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAY-REQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRI-ENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKPLVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTH--SSKELHEMGERAHQLFKDKYTREINTMKYYNLLK |
| 2JJM Chain:A ((2-370)) | ----KLKIGIT-CYP--GGSGVVGTELGKQLAERGHEIHFITSGLP-----------KVYPNIYFHEVTVN-------F-QYPPYDLALASKMAEVAQRENLDILHVHYAIPH-AICAYLAKQMIGERIKIVTTLHGTDITVLG---S----D---PSLNNLIRFGIEQSDVVTAVSHSLINETHELVKP--NKDIQTVYNFIDERVYFKRDMTQ-LKKEYGIS---KILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQ--DNVAELLAMSDLMLLLSEKESFGLV----LLEAMACGVPCIGTR--VGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JJM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227719 for 3021 contacts (-75.4/contact) +
2D Compatibility (PS) -37000 + (NN) -7333 + (LL) 1528
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -283174.0 ( -93.74 by residue)
QMean score : 0.452
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