Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPH--LQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
4UQM Chain:A ((40-238))
---------------FHELTDFLRQERKEYTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAAQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEW-----
General information:
TITO was launched using:
RESULT:
Template:
4UQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99014 for 1595 contacts (-62.1/contact) +
2D Compatibility (PS) -21658 + (NN) -10669 + (LL) 1676
1D Compatibility (HY) -20000 + (ID) 5350
Total energy: -155015.0 ( -97.19 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_4UQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UQM-query.scw
PDB file :
Tito_Scwrl_4UQM.pdb
: