Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHI--IIDQIGDENKAILKDFLMNHDEGMWKLSSDALHQAFN
2JR5 Chain:A ((14-57))
------------------------------------------------------------------------------------------------------------CRRGML-------ELDVVIMPFFEECFDSLTESEQDDFVALLESDDPDLFA-----------
General information:
TITO was launched using:
RESULT:
Template:
2JR5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10835 for 192 contacts (-56.4/contact) +
2D Compatibility (PS) -4429 + (NN) -1705 + (LL) 7544
1D Compatibility (HY) -4000 + (ID) 350
Total energy: -13775.0 ( -71.74 by residue)
QMean score : -0.039
(partial model without unconserved sides chains):
PDB file :
Tito_2JR5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JR5-query.scw
PDB file :
Tito_Scwrl_2JR5.pdb
: