Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNND--KSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
3LD2 Chain:A ((35-192))
-MKISPMLLSDIEQVVELENKTWSEQNTPVP-LPVASKDQIIQKFES---NTHFLVAKIKDKIVGVLDYSSLYPFPSGQHIVTFGIAVAEKERRKGIGRALVQIFLNEVKS-DYQKVLIHVLSSNQEAVLFYKKLGFDLEARLTKQFFLKGQYVDDLIYSYDLE--
General information:
TITO was launched using:
RESULT:
Template:
3LD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79515 for 1116 contacts (-71.2/contact) +
2D Compatibility (PS) -16096 + (NN) 602 + (LL) -136
1D Compatibility (HY) -8800 + (ID) 1300
Total energy: -105245.0 ( -94.31 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_3LD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD2-query.scw
PDB file :
Tito_Scwrl_3LD2.pdb
: