Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTL-SIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
3OUT Chain:A ((7-253))
-NRPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVIDVITAGVS---LVDNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEE-GFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILDVK--LIDPSLQASKMLYSLL-FENKLLNTTKNPEYRFYVTDIPLKFRSVGEMFL-------------
General information:
TITO was launched using:
RESULT:
Template:
3OUT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -211329 for 2215 contacts (-95.4/contact) +
2D Compatibility (PS) -26294 + (NN) -7795 + (LL) 1772
1D Compatibility (HY) -24800 + (ID) 4400
Total energy: -272846.0 ( -123.18 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3OUT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OUT-query.scw
PDB file :
Tito_Scwrl_3OUT.pdb
: