Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF |
4NF2 Chain:A ((33-331)) | ---LNTKDLLTLEELTQEEIISLIEFAIYLKKNK----QEPLLQGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMQRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEE-TNTFKGIKLAYVGDG-NNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGE--EEKYTLFQPYQINKELV-KHAKQTYHFLHCLPAH-----------------REEEVTGEIIDGPQSIVFEQAGNRLHAQKALLVS----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -123619 for 2613 contacts (-47.3/contact) +
2D Compatibility (PS) -32848 + (NN) -18976 + (LL) 2256
1D Compatibility (HY) -26800 + (ID) 6150
Total energy: -206137.0 ( -78.89 by residue)
QMean score : 0.640
|
|
|