Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDK-AKYITGQTIHVNGGMYM |
4DMM Chain:A ((29-268)) | ----RIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELA---AEKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DMM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91481 for 2163 contacts (-42.3/contact) +
2D Compatibility (PS) -25557 + (NN) -3345 + (LL) 736
1D Compatibility (HY) -27200 + (ID) 7200
Total energy: -154047.0 ( -71.22 by residue)
QMean score : 0.647
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