Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILAEIVKYKQSLLQNGYYQDKLNTLKSVKIQNKKSFINAIEKEPKLAIIAEIKSKSPTVNDLPERDLSQQISDYEKYGANAVSILTDEKYFGGSFERLQALTTKTTLPVLCKDFIIDPLQIDVAKQAGASMILLIVNILSDKQLKDLY-NYAISQNLEVLIEVHDRHELERAYKVNAKLIGVNNRDLKRFVTNVEHTNTI--LENKKP-NHHYISESGIHDASDVRKILHSGIDGLLIGEALMRCDNLSEFLPQLKMQKVKS
1VC4 Chain:A ((36-252))
------------------------------------SFKEALLR-PGLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG--ELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEEL-KALEGLFDAVLIGTSLMRAPDLEAALREL-------
General information:
TITO was launched using:
RESULT:
Template:
1VC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138552 for 1832 contacts (-75.6/contact) +
2D Compatibility (PS) -22514 + (NN) -6665 + (LL) 3972
1D Compatibility (HY) -16000 + (ID) 4100
Total energy: -183859.0 ( -100.36 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1VC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VC4-query.scw
PDB file :
Tito_Scwrl_1VC4.pdb
: