Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTHYHFVGIKGSGMSSLAQIMHDLGHEVQGSDIENYVFTEVALRNKGIKILPFDANNIKEDMVVIQGNAFASSHEEIVRAHQLKLDVVSYNDFLGQIIDQYTSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGD-GTGMGLPESDYFAFEACEYRR-----------HFLS--YKPDYAIMTNIDFDHPDYFKDINDVFDAFQEMAHNVKKG--IIAWGDDEHLRKIEADVPIYYYGFKDSDDIYAQNIQITDKGTAFD-VYVDGEFYDHFLS-PQYGDHTVLNALAVIAISYLEKLDVTNIKEALETFGGVKRRFNETTIAN--QVIVDDYAHHPREISATIETARKKYPHKEVVAVFQPHTFSRTQAFLNEFAESLSKADRVFLCEIFGSIRENTGALTIQDLIDKIEGASLINEDSINVLEQFDNAVVLFMGAGDIQKLQNAYLDKLGMKNAF |
| 2AM2 Chain:A ((104-338)) | --------------------------------------------------------------------------------------------------------AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYLPIDKKVVRFG-------QGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILET--------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AM2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82799 for 1577 contacts (-52.5/contact) +
2D Compatibility (PS) -22416 + (NN) -2776 + (LL) 16120
1D Compatibility (HY) -4400 + (ID) 2800
Total energy: -99071.0 ( -62.82 by residue)
QMean score : 0.388
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