Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLYTSYGTYGFLHQIKINNPTHQLFQFSASDTSVIFEETDGETVLKSPSIYEVIKEIGEFSEHHFYCAIFIPSTEDHAYQLEKKLISVDDNFRNFGGFKSYRLLRPAKG-TTYKIYFGFADRHAYEDFKQSDAFNDHFSKDALSHYFGSSGQHSSYFERYLYPIKE
2BBE Chain:A ((10-106))
--------------------------------------------------------------NQQQIVCVASFLSKEGKTEALIAALASLIPDTRREAGCIRYELNVSRDEPRRVTFVEKFVDIAAFDEHCAKDAIQHYFHQV------MPELVESFHVETYHQV---
General information:
TITO was launched using:
RESULT:
Template:
2BBE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35764 for 666 contacts (-53.7/contact) +
2D Compatibility (PS) -10776 + (NN) -6531 + (LL) 5072
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -51749.0 ( -77.70 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_2BBE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BBE-query.scw
PDB file :
Tito_Scwrl_2BBE.pdb
: