Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGS-WNLGEPPHEGTQKILNKHNIPFDGMISELF-EATDDFDYIVAMDQSNVDNIKSIN---PNLKGQLFKLLEFSNMEESDVPDPYYTN--NFEGVYDMVLSSCDNLIDYIVKDANLKEG
1PNT Chain:A ((8-156))
---VLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSCLRNHGINTAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSYDPQKQLIIEDPYYGNDADFETVYQQCVRCCRAFLEKV---------
General information:
TITO was launched using:
RESULT:
Template:
1PNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80162 for 1179 contacts (-68.0/contact) +
2D Compatibility (PS) -15252 + (NN) -7137 + (LL) 740
1D Compatibility (HY) -12400 + (ID) 2550
Total energy: -116761.0 ( -99.03 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_1PNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNT-query.scw
PDB file :
Tito_Scwrl_1PNT.pdb
: