Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAWNYHATGANGANMSAQAPATNNVEPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKASEGSSVNVNAHLKQIAQRESGGNIHAVNPT----SGAAGKYQFLQ-ST-WDSVA---PAKYKG-VSPAN-APESVQDAAAVKLYNT-GGAGHWVTA |
2NWD Chain:X ((23-111)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------ISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3377 for 537 contacts (6.3/contact) +
2D Compatibility (PS) -8267 + (NN) -3888 + (LL) 8404
1D Compatibility (HY) -800 + (ID) 900
Total energy: -2074.0 ( -3.86 by residue)
QMean score : 0.324
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