Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLLFVDTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSYTKSDVID----RTLKHCDNCGG-AIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAAGL--ISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
4TWJ Chain:A ((1-224))
MEDEIRKAAEILAKSKHAVVFTGAGISAE----------------------PEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMAD---------------------
General information:
TITO was launched using:
RESULT:
Template:
4TWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78325 for 1533 contacts (-51.1/contact) +
2D Compatibility (PS) -21725 + (NN) -9631 + (LL) 2208
1D Compatibility (HY) -13600 + (ID) 3850
Total energy: -124923.0 ( -81.49 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_4TWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TWJ-query.scw
PDB file :
Tito_Scwrl_4TWJ.pdb
: