Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYF-LDMADQVIVGTQEGVKILEK
4M8L Chain:A ((12-219))
------LKKLAATEAAKSITTEITLGVGTGSTVGFLI---EELVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG-NFPLPIEVIPMARSYIARQIVKLGGQPVYRE-----QTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDS------
General information:
TITO was launched using:
RESULT:
Template:
4M8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118503 for 1809 contacts (-65.5/contact) +
2D Compatibility (PS) -22542 + (NN) -8684 + (LL) 2024
1D Compatibility (HY) -13600 + (ID) 4100
Total energy: -165405.0 ( -91.43 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_4M8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M8L-query.scw
PDB file :
Tito_Scwrl_4M8L.pdb
: