Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKTIMASSLAVALGVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSDVQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRTGVSASTWAAIIARESNGQVNAYNP--SG--ASGLFQTMP-GWGPT------------------N-TVDQQINAAVKAYK-AQGLGAWGF |
1LMQ Chain:A ((22-109)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------GNSLPNWVCLSKWESSYNTQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIRCSQLLTDDLTVAIRCAKRVVLDPNGIGAWV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LMQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16775 for 365 contacts (-46.0/contact) +
2D Compatibility (PS) -6919 + (NN) -3382 + (LL) 8540
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -21036.0 ( -57.63 by residue)
QMean score : 0.612
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