Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQYAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN------VHAAIIGKAAHQASFWEGLE
2W79 Chain:A ((5-230))
-----PAIDLFRGKVARMIKGRKENTIFYEKDPVELVEKLIE-EGFTLIHVVDLSNAIENSGENLPVLEKLSEFA-EYIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSSLKSLREIDVEPVF-SLVTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKVGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRA-----FLEGI-
General information:
TITO was launched using:
RESULT:
Template:
2W79.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95527 for 1799 contacts (-53.1/contact) +
2D Compatibility (PS) -24071 + (NN) -9436 + (LL) 1736
1D Compatibility (HY) -16400 + (ID) 2800
Total energy: -146498.0 ( -81.43 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_2W79.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W79-query.scw
PDB file :
Tito_Scwrl_2W79.pdb
: