Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAFLGALEFQENEYEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCGACGSIHLIHDETTKAKTPYIANWIQFLEPIKEELKNHPQFSNHFA--KRSWLTERLNARLQLNNLLSYDFIQ---ERVINNELKIFGWHYIIETGRIYNYNFESHFFEPIEETIKQRISHENF
3MF3 Chain:A ((20-210))
---------------EENSTYFKELADHQTPHYLWIGCSDSRVPAEKLTNLEPGELFVHRNVANQV-----IHTDFNCLSVVQYAVDVLKIEHIIICGHTNCGG------IHAAMADKDLGLINNW---LLHIRDIWFKHGHLLGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAWER--GQKLSLHGWVYDVNDGFLVDQGVMATSRETLEISYRNAIARLSI
General information:
TITO was launched using:
RESULT:
Template:
3MF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110927 for 1416 contacts (-78.3/contact) +
2D Compatibility (PS) -19687 + (NN) -6149 + (LL) 2428
1D Compatibility (HY) -15200 + (ID) 2800
Total energy: -152335.0 ( -107.58 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3MF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MF3-query.scw
PDB file :
Tito_Scwrl_3MF3.pdb
: