Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKK-KNALLWDLQNGLSALYARDYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRAEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKNKGLGYLNEAYGI-SQSPFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPCKRSLESPKIIDARELLSGFVTAPQVFCSNRHNILYVRSFKNGFVLSHLK |
| 3AS5 Chain:A ((13-177)) | --------------------------DKGISHAKAGRYSQAVMLLEQV-YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN------------------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRF---RLGVALDNLG---------RFDEAIDSFKI--------ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVPR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AS5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4952 for 1281 contacts (-3.9/contact) +
2D Compatibility (PS) -17353 + (NN) -5548 + (LL) 21200
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -9003.0 ( -7.03 by residue)
QMean score : 0.447
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