Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKIYATGKRKTAIAKVWLTPGKGELSINEQSLNQWLGGHEAIKMKVMQPLLLTKQEQSVDIKAVVFGGGYSAQAEALRHGISKALNAYDIAFRAILKPKGLLTRDSRVVERKKYGKRKARRSPQFSKR
4DV1 Chain:I ((2-128))
-EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGL-VRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
4DV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29746 for 902 contacts (-33.0/contact) +
2D Compatibility (PS) -13274 + (NN) -2211 + (LL) 312
1D Compatibility (HY) -7200 + (ID) 3000
Total energy: -55119.0 ( -61.11 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_4DV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DV1-query.scw
PDB file :
Tito_Scwrl_4DV1.pdb
: