Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHAN----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKE---VPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV
1JOE Chain:C ((9-144))
---------VDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKN--
General information:
TITO was launched using:
RESULT:
Template:
1JOE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56871 for 922 contacts (-61.7/contact) +
2D Compatibility (PS) -13389 + (NN) -2587 + (LL) 996
1D Compatibility (HY) -9600 + (ID) 2700
Total energy: -84151.0 ( -91.27 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_1JOE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOE-query.scw
PDB file :
Tito_Scwrl_1JOE.pdb
: