Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLAFSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEEERQKYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCACEGPFHDHEKKGQKGKKPSHHKH
4M06 Chain:A ((101-204))
----------TQQFLSAFMGTRLGRHLTSGGLLHGVSK-KPTYVAGFPESMKTELQVNGESGSRPYAIVIPIKKDAEFWALDQEARTALMQEHTQAALPYLKTVKRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQVKE
General information:
TITO was launched using:
RESULT:
Template:
4M06.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 22184 for 492 contacts (45.1/contact) +
2D Compatibility (PS) -10373 + (NN) 2384 + (LL) 1436
1D Compatibility (HY) -3600 + (ID) 1300
Total energy: 10731.0 ( 21.81 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_4M06.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M06-query.scw
PDB file :
Tito_Scwrl_4M06.pdb
: