Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKELILKRIKEARAKHAIQGANPIYRNIIKVEFEDLVEEYKHFQVLNKAELIESAKENLEQAILKALENFQSKKVLHSTDLNLNFEAFKDFTLQPYDKEIEAMREELFEIDTALLHGVCGISSLGMIGAVSSHASPRLLSLITLNCIILLKKES--IVRNLSEG----VQALKNQGQNGALPTNMLLIGGPSRTADIELKTVFGVHGPQKVAVILY |
| 4B8J Chain:A ((323-386)) | ----------------------------------------------------------------------------------------------------------------------------------IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL-VNLL------QTAEFDIKKEAAWAISNATSGGSH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4B8J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10184 for 334 contacts (-30.5/contact) +
2D Compatibility (PS) -6110 + (NN) -3218 + (LL) 11244
1D Compatibility (HY) -4400 + (ID) 1200
Total energy: -13868.0 ( -41.52 by residue)
QMean score : 0.334
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