Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKQILTILTPFFVATLLYFLGAPDGLNPNAWLYFCIFMGMIIGLILEPVPSGLIALSAL-VPCIALKIGASSEVASANKAISWGLSGYANKTVWLVFVAFILGLGYEKSLLGK---RIALLLIRFLGQTPLGLGYA-IGLSELCLAPFIPSNSARSGGILYPIVSSIPPLMGSTPSNNPDKIGAYLMWVALASTCITSSMFLTALAPN-PLAMEIATKMGVNEISWFSWFLAFLPCGVVLILLVPLLAYKTCKPTLKGSKEVSLWAKKELESMGRFSLKEILMLSLTLLALLGWIFGKSLGLHASATALIVMVLMAFCKIVSYEDIIKNKSAFNIFLLLGSLLTMAGGLKNVGFLNFIGNAAQNFLEHAHLDPLIAVLFIVALFYLSHYFFASITAHVSALFALFVGIGSHIQGVNLQELSLFLMLSLGIMGILTPYGTGPSTIYYGSGYIQSKDFWKWGFIFGFLYLIVFLSVCAPWVKFIAYRWL |
| 4Q98 Chain:A ((9-365)) | ---------VVETNATVSFIIKSGESRAVG-----------------DDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCKSGANRVLVVVA-----NHNYELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSA---AFTIKPGSNHYG---YP---------GGTASDNLVSAG-----TPLAVTRVHAGISFAGVEVNMATQYQN--------------YYSFKPADAKIAALVAKKDSKIFGNSLVSNTNAYLYGVQT--PAGLYTPDAA-----------GETYELEASLNTNYAVGAGFYVLE----SKYDA--SNELRPTILCIYGKLLDKDGN-------PLTEPALTDAINAGFCDGDGTTYYPVLVNYDGNGYIYS---------------GAITQGQNKIVRNNHYKISLNI--------TGPGTNTPENPQPVQAN----------------LNVTCQVTPWVVVNQ- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q98.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -323950 for 2899 contacts (-111.7/contact) +
2D Compatibility (PS) -37599 + (NN) 1446 + (LL) 14332
1D Compatibility (HY) 2800 + (ID) 3300
Total energy: -346271.0 ( -119.44 by residue)
QMean score : 0.088
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