Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRFSIFFKVVALFMITLFSFGAFAYYFVSSQISHENYQNEMRHYQFVTTINEILNNYSDYRAIEDYLYKIGFRETTIENLEKVLAKRRHQLHHRNIWYAEVFKFSDMVFILLKKDEHFVLYKDLHSVSYRNYFLAITVGLLLILFLFLFVLQSLLPLRELRSQVKRFAQGDKSVSCKSKQKDEIGDLANEFDNCIQKINAMNESRVLFLRSIMHELRTPITKGKILSSMLKEELSCKRFSSIFDHLNMLIEQ-------------FARIEQLASKNYGSNKEKFLMSDLIDKIEKML-----------LIDEDKKSPIHVSSSNYIIEADFELFAIALKNMIDNAIKYS---------------DDKQVFLDFIGNNLVVSNKSKPLKEDFEKYLQPYFKSSNPSQAHGFGLGMYIIKNALEAMGLNLSYHYSNGRICFTIHDCVFNSFYDLEADNEELPPPRKFERGEGNEGNRKSQLWG |
| 4JAV Chain:A ((10-226)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLER---KSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEA----YI---DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK--DRIFEQFYR--VDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKD---------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -56461 for 1047 contacts (-53.9/contact) +
2D Compatibility (PS) -18908 + (NN) -6167 + (LL) 19944
1D Compatibility (HY) -12000 + (ID) 2550
Total energy: -76142.0 ( -72.72 by residue)
QMean score : 0.445
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