Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA---NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEATQNAPFM--ATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFDAKRQTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQSESMGIDTKEDLQNALKIFSPNLLKR
1GQC Chain:A ((4-226))
VIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQAFGGKAIMTRNDHESGTDRLVE---VMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKAR---YLKHVGIYAYR-RDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQELA--
General information:
TITO was launched using:
RESULT:
Template:
1GQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133354 for 1734 contacts (-76.9/contact) +
2D Compatibility (PS) -23492 + (NN) -11076 + (LL) 528
1D Compatibility (HY) -14800 + (ID) 4150
Total energy: -186344.0 ( -107.46 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1GQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GQC-query.scw
PDB file :
Tito_Scwrl_1GQC.pdb
: