Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKMNKVVLHKEYSGFVRFFHWVRALSIFTLIATGFYIAYPFLQPNSSFYKGVYLLQAYVRSFHVMFGFLLISALIFRTYLFFTKESLMERRSFSQLLSPKAWIDQMKAYFLISDKPHTKGLYNPIQLVAYFTLVVLIVLMSLSGIVLYYNVYHEGLGAFLANAFKWFEALCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYDSSGADSMINGYGYTKE
4GD3 Chain:A ((8-210))
------VVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGE--ATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRQGVW---------------------YEIRWYLFLPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIFAPFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSD----------------
General information:
TITO was launched using:
RESULT:
Template:
4GD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121669 for 1031 contacts (-118.0/contact) +
2D Compatibility (PS) -18296 + (NN) -6824 + (LL) 2620
1D Compatibility (HY) -16000 + (ID) 2250
Total energy: -162419.0 ( -157.54 by residue)
QMean score : 0.067
(partial model without unconserved sides chains):
PDB file :
Tito_4GD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GD3-query.scw
PDB file :
Tito_Scwrl_4GD3.pdb
: