Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDREQIIALQHQRFATKKYDPNRRISEKDWEVLVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGGLSSLE----GASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTHSRFA------------QIIKNFQENDIKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAY--LEEKGYLNTAEFGVSVMASFGYRNQE----ITPKTRWKTEVIYEVIE
1ICV Chain:A ((3-207))
-----IISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAK--TAMDDVWLKLVVDQ-----EDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAE-----WMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSL------VVVPVGHHSVEDFNATLPKSRLPQNITLTEV-
General information:
TITO was launched using:
RESULT:
Template:
1ICV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61725 for 1314 contacts (-47.0/contact) +
2D Compatibility (PS) -20002 + (NN) -10105 + (LL) 1524
1D Compatibility (HY) -11200 + (ID) 2850
Total energy: -104358.0 ( -79.42 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1ICV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ICV-query.scw
PDB file :
Tito_Scwrl_1ICV.pdb
: