Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKALKILSVGALLFVALNAKDFSKTSDEDLAKMAGVVAPQDIVDYTKEL---KKRMEKMPEDKRKAFHKQLHEYATKNT--------------DKMTVADFEARQKAIKEALKKGNMEDMDDDFGLRSCKHGKKHKHDKHGKKHGKKHDKDHDDKDHDHHDEDHSDKH |
1YDI Chain:A ((160-236)) | ----------------------------------------EDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAW------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YDI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 9052 for 268 contacts (33.8/contact) +
2D Compatibility (PS) -6438 + (NN) -3397 + (LL) 3936
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -1847.0 ( -6.89 by residue)
QMean score : 0.163
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