Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------------------MDSKKPHYRVSLSEQALNHEKLMRAIVKNLA---DTPMVLKGETALYLGY--GLNRFSEDLDFDCHKKINLLGRVKSAIPN-GIILNDIHIK-KDTDSVGRYMVRYATKDNKEEQTLKLEI----------SYRDAPKESEVNVIEGMRIAKIERIIDNKLCACFDGEHTRTKARD---LFDLHFLAKHYEEHFNLD-LASRLKDFSKDPDKLVSDYLVDVKLDALLNQIMD---------------------------LEETALELGVMAQ----------------LIHKKLEKQSHSLNALQ------EQQGYSNNDNSLDNSNENTYTPKRRR--------- |
4RDQ Chain:A ((1-366)) | TVTYTNRVADARLGTFSQLLLQWKGSIYKLLYSEFLIFISLYFAISLVYRLILSESQRLMFEKLALYCNSYAELIPVSFVLGFYVSLVVSRWWAQYESIPWPDRIMNLVSCNVDGEDEYGRLLRRTLMRYSNLCSVLILRSVSTAVYKRFPSMEHVVRAGLMTPEEHKKFESLNSPHNKFWIPCVWFSNLAVKARNEGRIRDSVLLQGILNELNTLRSQCGRLYGYDWISIPLVYTQVVTVAVYSFFLACLIGRQFLDPEKAYPGHELDLFVPVFTFLQFFFYAGWLKVAEQLINPFGEDDDDFETNWLIDRNLQVSLMAVDEMHQDLPILEKDLYWNEPDPQPPYTAATAEYKRPSFLGSTFDIS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RDQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 38556 for 1662 contacts (23.2/contact) +
2D Compatibility (PS) -28339 + (NN) -18520 + (LL) 0
1D Compatibility (HY) -16000 + (ID) 2500
Total energy: -26803.0 ( -16.13 by residue)
QMean score : 0.204
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