Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MQDLKVISKHYAKALKNHTKSDLALLEEIVVGLKNLAEAIKLHKLNQVLAHVSLKVKKEVVLEILEKITPTKACSILKPVMEVVLKNNRLDMLELVAEELSFDSKRTLEATLLVPQKLENNELEEVQQKLQARFNAPVEIAQDTWSKKGVSLSVSSLDLEIGFSKEDILKKIEKQVIQSI
1PGS Chain:? ((4-140))
DNTVNIKTFDKVKNAFGDGLSQ--------------SAEGTFTFPADVTTVKTIKMFIKNE---------CPNKTCDEWDRYANVYVKNKTTGEWYEIGRFITPYWV----GTEKLPRGLEID-VTDFKSLLSG--NTELKIYTETWLAKG---REYSVDFDIVYGTPDYKYSAVVPVIQYN
General information:
TITO was launched using:
RESULT:
Template:
1PGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13990 for 1008 contacts (-13.9/contact) +
2D Compatibility (PS) -13297 + (NN) 10406 + (LL) 3956
1D Compatibility (HY) -5600 + (ID) 1250
Total energy: -19775.0 ( -19.62 by residue)
QMean score : 0.050
(partial model without unconserved sides chains):
PDB file :
Tito_1PGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PGS-query.scw
PDB file :
Tito_Scwrl_1PGS.pdb
: