Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIGIFFGTDSGNAEAIAEKISKAIGNAEVID---VAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVKGSFA
1CZO Chain:A ((2-167))
--KIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGCPTWGVGELQSDWEGIYDDLDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEFG
General information:
TITO was launched using:
RESULT:
Template:
1CZO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93092 for 1369 contacts (-68.0/contact) +
2D Compatibility (PS) -17594 + (NN) -9640 + (LL) 36
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -138090.0 ( -100.87 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_1CZO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CZO-query.scw
PDB file :
Tito_Scwrl_1CZO.pdb
: