Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLETSSHFLKSFRLKRYIGFLLISLALLITPFVRIDGAHLFLISFEHKQLHFLGKIFSAEELQILPFMVILLFIGIFFITTSLGRVWCGWACPQTFLRVLYRDVIETKIFKLHKKISNKQESPKNTPSYKIRKALSVLLFAPVVAGLMMLFFFYFIAPEDFFMYLKNPSDHPIAMGFWLFSALVVLFDIVVVAERFCIYLCPYARVQSVLYDNDTLNPIYDEKRGGVLYDNQGRLFPLPPKKRSAENECVNCLH--CVQVCPT--HIDIRKGLQL----ECINCLECVDACTITMAKYNRPSLIQWSSTNAINTRQKVRLVRLKTIAYMGVIAVVVALLIITSFKKERMLLDINRNSDLYEIRSSGYVDNDYVFLFHNTDNKDHEFYFKILGQKDIQIKKPLNPIAIKAGQKIKAVVILRKPLKGNATEYKHAKDALIPITIQAYSVDDKNITIERESVFIVPSED |
2VPX Chain:B ((57-110)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QCLHCENPPCVPVCPTGASYQTKDGLVLVDPKKCIACGACIAACPYD-ARYLHPAGYVSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLEDPESPVAKALKAAERVDVLRPEQGTRPKLFYLNAPSKKGLTRESEVHH-------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VPX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -15297 for 245 contacts (-62.4/contact) +
2D Compatibility (PS) -4624 + (NN) 1489 + (LL) 27716
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: 2284.0 ( 9.32 by residue)
QMean score : 0.316
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