Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVICKHYTPLDIASQAIRTCWQSFEYSDDGGCKDRDLIHRVGNIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKSSRYTLRELKEVESFLPLNETNLERAKEFLVFVDDEKVNE-MSVLALENLRVLLS--EHNIKNDLAKYAMPESYKTHLAYSINARSLQNLLTLRSSNKALKEMQDLAKALFDALPYEHQYLFEDCLKH
4GTD Chain:A ((35-220))
----------------AVRAARVSFDM----EERDRHLIEYLMK-HGHETPFEHIVFTFHVKAPIFVARQWF-RHRIASYNELS-----LSY---EFYIP----SPERLEGYKTTIPPERVTEKISEIVDKAYRTYLELIESGVPRRVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKY
General information:
TITO was launched using:
RESULT:
Template:
4GTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49522 for 1160 contacts (-42.7/contact) +
2D Compatibility (PS) -17972 + (NN) -2997 + (LL) 2244
1D Compatibility (HY) -11200 + (ID) 2700
Total energy: -82147.0 ( -70.82 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_4GTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GTD-query.scw
PDB file :
Tito_Scwrl_4GTD.pdb
: