Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKLIQFLFIAVVLFLVEYVLINQAAILFLVTSGIIQLCGVIIAIRLLLFDQRNTSSKVAWVAVIFILPVLGTISYLVFGRNPATRKFSTAQVKEKTKLINAIHAIPNNTNEKLPRLSKRIAHLTSIEPIKGNKIEILTNGEETFPVLLDALRKAEN-----HIHIQYYIFKTDAISTEIRDILVEKAKSGVEVRFMFDGLGSSK--LGKAFLAPLKEAGVSIHAFDPIASPWIVRTANLRNHRKIVVIDGQ-------IGFTGGLNIGEEYRSNTPDFRVWRDTHIKITGQ-AVIELQESFLNDWVYMENQAGAADGFISESGSKQYFSPVDMGDEWAQVIYGGPYDKEKWVRDSMLDLIDSAK----ESVWIVSPYFVPDEESLAVIRRVAMSGVDVRVIIPGKGDRGISFHGSNAYVKTMIEA--GAKMYAYADDSFVHAKAMLVDGT---RAAIGTANFDVRSFRLNHELMVFLYDESEAMHHLKRDFKKDFE---DSRLFTMKDMENKPLLTRIKEVLSSLLSPIL |
1XDP Chain:A ((340-657)) | ---------------------------------------------------------------------------------------------------------------------------------------VLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKD---SRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPG----------LKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTAR------LYTDYSLLTADARITNEVRRVFNFIENPYRPV--TFD----------------------YLMV-SPQNSRRLLYEMVDREIANAQQGLPSGITLKLNNLV-DKGLVDRLYAASSSGVPVNLLVRGMCSLI----------PNLEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEVATPLLDPR-LKQRVLDIIDILFSDTVKARYIDKEL---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139829 for 2500 contacts (-55.9/contact) +
2D Compatibility (PS) -31783 + (NN) -9600 + (LL) 16936
1D Compatibility (HY) -14000 + (ID) 2600
Total energy: -180876.0 ( -72.35 by residue)
QMean score : 0.435
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