Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------LAEVDKST-------IGEVEGVTFQSYFLIKNMLHTRVVGDLEKRL------------------PVTLEKMVEYVESNRKEIITPIFIVLNYVGNVPYVDVYVGIDPYDE-
1VK5 Chain:A ((36-156))
GSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSF---IDPIFPE
General information:
TITO was launched using:
RESULT:
Template:
1VK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19025 for 513 contacts (-37.1/contact) +
2D Compatibility (PS) -8238 + (NN) -2300 + (LL) 112
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -32251.0 ( -62.87 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_1VK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK5-query.scw
PDB file :
Tito_Scwrl_1VK5.pdb
: