Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLPPEADYLNDETLEVYENDKKKYDQTNQLITNNSVTILLGDFCYYESAWSSRWRDNRFWIGSKVS
2GRR Chain:A ((123-150))
---PNIQSPAQAEAYTIYCQNRVEYEKRVRA------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GRR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7826 for 134 contacts (58.4/contact) +
2D Compatibility (PS) -3068 + (NN) -2526 + (LL) 2564
1D Compatibility (HY) -400 + (ID) 200
Total energy: 4196.0 ( 31.31 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_2GRR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GRR-query.scw
PDB file :
Tito_Scwrl_2GRR.pdb
: