Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFSIGEFSELVGIPSSTLRFYEKEGLITP---DRDKNNLRTYSEEDANWLKFLLHLKGAGLSIEELKQYT--------IWRTAGDSTISERLNMLKEKKIVLEQEIENLQKDLDTVVRKIGIYEEKVAKLDV
1R8E Chain:A ((6-112))
--YSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPD-TSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLS----ALEQTISLVKKRM-------------------
General information:
TITO was launched using:
RESULT:
Template:
1R8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37043 for 536 contacts (-69.1/contact) +
2D Compatibility (PS) -10464 + (NN) -7791 + (LL) 2496
1D Compatibility (HY) -8000 + (ID) 1650
Total energy: -62452.0 ( -116.51 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_1R8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8E-query.scw
PDB file :
Tito_Scwrl_1R8E.pdb
: