Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKSLSFMRVLEAVRTMLQEKG-GLDISIVMRDQ-VEMP------TTMI--EMIDQEEEES--QTAWKEKYRFAIHHYTNETDL-A-GVEKIDTLIQTGFTLPEGYKLIAVRHYGKQNLVKENTLIHAKTSFEVSICRELKVKI
2GJV Chain:A ((27-118))
-----TLSVIHTVANRLRELNPDMDI-HISSTDAKVYIPTGQQVTVLIHYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGI---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41625 for 405 contacts (-102.8/contact) +
2D Compatibility (PS) -8398 + (NN) -1230 + (LL) 4268
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -50035.0 ( -123.54 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_2GJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GJV-query.scw
PDB file :
Tito_Scwrl_2GJV.pdb
: