Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFEENLYCDYTPGAAKAVAGKDVILAVFNAA---------GDKLLAVAGQQGLT-VNRSKDSIEITSKDTVG-GWKSKIGGMKEW-SIENDGLYVADAESHKELAKYFESDSPVCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQMPGETPVAPAE
2K4Q Chain:A ((6-155))
-----------VPNPTMPVKGAGTTLWVYKGSGDPYANPLSDVDWSRLAKVKDLTPGELTAESYDDSYLDDEDADWTATGQGQKSAGDTSFTLAWMPGEQGQQALLAWFNEGDTRAYKIRFPN--GTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGRPSMA-------------------
General information:
TITO was launched using:
RESULT:
Template:
2K4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25606 for 771 contacts (-33.2/contact) +
2D Compatibility (PS) -14375 + (NN) 2216 + (LL) 1456
1D Compatibility (HY) -800 + (ID) 1150
Total energy: -38259.0 ( -49.62 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_2K4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K4Q-query.scw
PDB file :
Tito_Scwrl_2K4Q.pdb
: