Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKFDLENGYVVKADGEMLVGGKFVVFKDSMKNWEPPYENKKLSESEVQEIIQQVKQSTNENTVQISFE
2DOA Chain:A ((61-99))
------------------KDGTCTLQDCMYKDVQKDW--PGYSEGDQQLLKRVLVRKLS---------
General information:
TITO was launched using:
RESULT:
Template:
2DOA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -793 for 169 contacts (-4.7/contact) +
2D Compatibility (PS) -4523 + (NN) -4165 + (LL) 2088
1D Compatibility (HY) -1200 + (ID) 250
Total energy: -8843.0 ( -52.33 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_2DOA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DOA-query.scw
PDB file :
Tito_Scwrl_2DOA.pdb
: