Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIDSIMSKYNKQQVSKIKDFLLSEIDSDNIEETIDFVKSNNQEKMGKFQDILYDGGIYSGLFIEGNQYLISSSNRKVLIIDAVSEENGVDKELTRIECSLEDFTFLLRNIKDVLRYEEF
2VW8 Chain:A ((10-43))
-----------------------------------------------GQLDDDLCLLGDV-----QVPVFLLRLGEASWALVEGGI-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7386 for 160 contacts (-46.2/contact) +
2D Compatibility (PS) -3586 + (NN) -1246 + (LL) 6324
1D Compatibility (HY) -2400 + (ID) 250
Total energy: -8544.0 ( -53.40 by residue)
QMean score : 0.177
(partial model without unconserved sides chains):
PDB file :
Tito_2VW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VW8-query.scw
PDB file :
Tito_Scwrl_2VW8.pdb
: