Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQ----TQTMSLYQQLEAGIRYIDIRAK---DN-LNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDE----QNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSE-NHTKKPLVIN------SRKFGMQFGA-PNQVIQDDYNGPSVKTKFKEIVQTAYQA---SKADNKLFLNHISATS---LTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN |
| 1PTG Chain:A ((6-275)) | ------------------------------ELENWSK----------WMQPIPDSIPLARISIPGTHDSG------TFKLQNPIKQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAEDSFSSTFE------KKYFVDPIFLKTEGNI-KLGDARGKIVLLKRYSGSNEPGGYNNFYWPDNETFTTTVNQNANVTVQDKYK-VSYDEKVKSIKDTMDETMNNSEDLNHLYINFTSLSSGGTAWNSPYYYASYINPEIANYIKQKNPARV---GWVIQDY---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1PTG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -93497 for 1884 contacts (-49.6/contact) +
2D Compatibility (PS) -26094 + (NN) -7568 + (LL) 4292
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -145067.0 ( -77.00 by residue)
QMean score : 0.522
|
|
|