Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKK-SKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQ-EFNRIRVGVSRPL-KGEVINYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
3OFV Chain:A ((2-188))
IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLH--
General information:
TITO was launched using:
RESULT:
Template:
3OFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120000 for 1472 contacts (-81.5/contact) +
2D Compatibility (PS) -19244 + (NN) -1642 + (LL) 184
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -155402.0 ( -105.57 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3OFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OFV-query.scw
PDB file :
Tito_Scwrl_3OFV.pdb
: