Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
1RAO Chain:A ((3-134))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110000 for 964 contacts (-114.1/contact) +
2D Compatibility (PS) -14082 + (NN) -5118 + (LL) 2208
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -140592.0 ( -145.84 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1RAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RAO-query.scw
PDB file :
Tito_Scwrl_1RAO.pdb
: