Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNVFEPRLSSWLENAGDDDDVVLSSRIRLARNLKDEQFPIYEQKEEIVDNIAEVFDDNFILIKMNQISLLQKALLVEKHLISPYMMNKSEYGAVLLNEEENVSIMLNEEDHLRIQCMTPGLRL---FDALEAALQIDGYVEEKLSYAFDKEFGYLTSCVTNIGTGMRASVMVHLPGLVTTKRIKSVIEAIRSLGFVVRGIYGEGSMPASNIFQVSNQVTLGKTEAEIVEDLTQVMEQIIMQERVARTTLKQKFHIALEDRVFRSYGLLMNCRIISMKEAADAISDIRFGVELGFFEHISRQKMNELVLFSQPAFLRREAGRDMDELEEKVIRAKVIREILGDK |
| 4WOD Chain:A ((206-348)) | --------------------------------------------------------------------------------------------GIFINKQKNFLVWINEEDHIRVISMQKGGGLTAVYKRLADAIQ---ELSKSLKFAFNDRLGFITFCPSNLGTTLRASVHAKIPMLASLPNFKEICE---KHGIQPRGTHGEHTESVGGIYDLSNKRRLGLTELDAVTEM---------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4WOD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -65597 for 794 contacts (-82.6/contact) +
2D Compatibility (PS) -14491 + (NN) -6036 + (LL) 18532
1D Compatibility (HY) -8800 + (ID) 2200
Total energy: -78592.0 ( -98.98 by residue)
QMean score : 0.463
|
|
|